JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHX3_chr9_136191250_136210128	0/0	t0003	1192	45	17	5	19	0	4	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0004	1192	19	0	0	10	0	9	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0005	1191	13	1	1	7	1	3	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0006	1192	4	0	0	4	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0007	1192	2	1	0	1	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0008	1192	2	0	0	0	0	2	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0009	1192	2	0	0	2	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0010	1191	2	0	0	2	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0011	1192	1	0	0	1	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0012	1192	1	0	0	0	0	1	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0013	1192	1	0	0	1	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0014	1192	1	1	0	0	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0015	1192	1	0	1	0	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0016	1192	1	0	1	0	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0017	1191	1	0	0	0	0	1	copy fasta	LHX3	chr9	136191250	136210128
LHX4_chr1_180225264_180283984	0/1	t0001	4666	201	27	24	108	12	29	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0002	4666	57	1	15	39	0	2	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0003	4665	17	5	1	9	0	2	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0004	4665	10	8	1	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0005	4666	9	9	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	1/0	t0006	4672	9	0	2	3	0	3	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0007	4666	9	0	6	2	1	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0008	4668	8	1	3	3	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0009	4666	8	1	4	0	2	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0010	4665	6	5	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0011	4673	5	3	2	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0012	4666	4	0	0	4	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0013	4665	4	4	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0014	4666	3	0	0	0	3	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0015	4666	3	3	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0016	4666	3	3	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0017	4668	2	2	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0018	4668	2	1	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0019	4678	2	2	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0020	4668	2	0	2	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0021	4666	2	2	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0022	4666	2	0	2	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0023	4665	2	2	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0024	4666	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0025	4674	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0026	4666	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0027	4666	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0028	4708	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0029	4668	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0030	4668	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0031	4665	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0032	4666	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0033	4666	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0034	4667	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0035	4665	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984