JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHX4_chr1_180225264_180283984	0/0	t0036	4668	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0037	4665	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0038	4666	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0039	4666	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0040	4665	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0041	4665	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0042	4666	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0043	4665	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0044	4672	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0045	4666	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0046	4666	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0047	4668	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0048	4667	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0049	4666	1	0	1	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0050	4665	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0051	4679	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0052	4666	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0053	4668	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0054	4665	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	t0055	4665	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX5_chr12_113457033_113476871	1/1	t0001	1531	326	58	57	158	14	37	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0002	1532	20	0	11	6	1	2	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0003	1532	15	14	1	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0004	1531	11	2	1	4	1	3	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0005	1531	8	7	1	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0006	1531	3	0	3	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0007	1531	3	3	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0008	1532	1	1	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0009	1531	1	0	0	1	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0010	1531	1	1	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0011	1531	1	0	1	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0012	1531	1	0	1	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0013	1531	1	0	0	1	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0014	1531	1	1	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0015	1532	1	1	0	0	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0016	1531	1	0	0	1	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX5_chr12_113457033_113476871	0/0	t0017	1531	1	0	0	1	0	0	copy fasta	LHX5	chr12	113457033	113476871
LHX6_chr9_122197582_122233957	0/0	t0001	2396	189	19	34	99	11	26	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/1	t0002	2396	80	10	20	43	3	3	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	1/0	t0003	2396	76	48	7	15	1	4	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0004	2396	37	0	8	20	0	9	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0005	2394	8	8	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0006	2396	7	0	0	7	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0007	2396	6	0	0	6	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0008	2396	5	0	5	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0009	2396	4	4	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0010	2396	3	0	0	3	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0011	2396	3	3	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0012	2396	2	0	0	2	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0013	2396	2	0	0	2	0	0	copy fasta	LHX6	chr9	122197582	122233957