JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHX6_chr9_122197582_122233957	0/0	t0014	2396	2	2	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0015	2396	2	0	1	0	1	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0016	2396	2	0	0	2	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0017	2396	1	1	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0018	2396	1	0	1	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0019	2396	1	0	0	1	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0020	2396	1	0	0	1	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0021	2396	1	1	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0022	2396	1	0	0	1	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0023	2396	1	0	0	0	0	1	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0024	2396	1	0	0	0	0	1	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0025	2396	1	1	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	t0026	2396	1	1	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX8_chr1_75129388_75166533	1/1	t0001	1218	134	32	33	45	4	18	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0002	1217	68	15	16	21	1	15	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0003	1216	57	29	13	7	4	4	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0004	1220	38	10	16	0	5	7	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0005	1219	12	9	3	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0006	1218	1	0	0	1	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0007	1216	1	1	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0008	1217	1	1	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0009	1220	1	1	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	t0010	1220	1	0	1	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX9_chr1_197912372_197940478	0/0	t0001	6671	94	17	22	44	1	10	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0002	6669	88	2	23	53	3	7	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0003	6671	84	12	20	32	3	17	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0004	6670	30	3	1	20	2	4	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0005	6671	11	0	0	11	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0006	6672	10	10	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/1	t0007	6671	9	6	1	0	1	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0008	6671	8	7	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0009	6672	7	0	0	7	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0010	6670	6	5	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0011	6671	6	0	0	6	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0012	6670	5	0	0	5	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0013	6673	5	5	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0014	6666	4	0	0	4	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0015	6672	4	4	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0016	6673	3	1	2	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0017	6671	3	0	2	0	0	1	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0018	6674	2	1	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0019	6673	2	0	0	2	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0020	6671	2	2	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0021	6672	2	0	0	2	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0022	6669	2	0	1	0	1	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0023	6674	2	2	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0024	6674	2	2	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0025	6673	2	2	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0026	6671	2	2	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0027	6671	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478