JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHX9_chr1_197912372_197940478	0/0	t0028	6670	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	1/0	t0029	6672	1	0	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0030	6671	1	0	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0031	6672	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0032	6671	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0033	6670	1	0	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0034	6671	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0035	6671	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0036	6672	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0037	6673	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0038	6672	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0039	6671	1	0	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0040	6672	1	0	0	0	1	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0041	6671	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0042	6670	1	0	0	0	0	1	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0043	6671	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0044	6670	1	0	0	0	0	1	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0045	6669	1	0	0	0	0	1	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0046	6672	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0047	6670	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0048	6671	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0049	6714	1	0	1	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0050	6671	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	t0051	6671	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LIAS_chr4_39454056_39484506	0/1	t0001	2451	120	8	30	58	2	21	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	1/0	t0002	2454	113	35	10	55	6	6	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0003	2454	68	4	13	40	2	9	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0004	2454	44	14	11	12	2	5	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0005	2451	23	0	2	19	1	1	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0006	2454	12	9	2	0	1	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0007	2454	11	10	1	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0008	2454	5	2	3	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0009	2452	3	3	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0010	2454	3	3	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0011	2451	2	0	0	2	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0012	2454	2	0	0	2	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0013	2454	2	0	2	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0014	2454	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0015	2454	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0016	2451	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0017	2478	1	0	1	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0018	2454	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0019	2454	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0020	2454	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0021	2454	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0022	2451	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0023	2454	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0024	2451	1	1	0	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0025	2451	1	0	1	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0026	2454	1	0	1	0	0	0	copy fasta	LIAS	chr4	39454056	39484506