JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIF_chr22_30235453_30251759	0/0	t0028	3264	1	0	1	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0029	3259	1	0	0	1	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0030	3259	1	0	0	1	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0031	3259	1	0	1	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0032	3259	1	0	0	0	1	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0033	3263	1	0	0	0	0	1	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0034	3263	1	0	0	0	0	1	copy fasta	LIF	chr22	30235453	30251759
LIG1_chr19_48110445_48175344	0/1	t0001	366	202	48	31	98	7	17	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	1/0	t0002	366	68	13	19	19	2	14	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0003	366	46	23	5	10	1	7	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0004	366	6	6	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0005	366	4	0	3	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0006	366	2	0	0	2	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0007	416	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	t0008	366	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG3_chr17_34975512_35014743	1/1	t0001	5353	112	11	31	52	4	12	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0002	5353	92	6	25	41	6	14	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0003	5354	63	8	7	45	1	2	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0004	5353	24	5	6	7	1	5	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0005	5352	20	0	0	19	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0006	5352	16	16	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0007	5354	5	0	0	5	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0008	5353	5	5	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0009	5358	4	2	2	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0010	5352	4	4	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0011	5352	4	4	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0012	5352	4	1	0	0	0	3	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0013	5352	4	0	0	4	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0014	5353	4	4	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0015	5354	3	0	0	3	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0016	5353	3	3	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0017	5352	3	3	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0018	5351	3	2	1	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0019	5352	3	3	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0020	5353	3	0	3	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0021	5353	2	0	0	1	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0022	5353	2	2	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0023	5353	2	2	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0024	5353	2	0	0	0	0	2	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0025	5352	2	2	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0026	5352	2	0	0	2	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0027	5353	2	0	0	2	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0028	5353	1	0	1	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0029	5353	1	0	0	0	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0030	5353	1	0	0	0	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0031	5353	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0032	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0033	5352	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0034	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0035	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743