JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIG3_chr17_34975512_35014743	0/0	t0036	5355	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0037	5354	1	0	1	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0038	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0039	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0040	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0041	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0042	5353	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0043	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0044	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0045	5352	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0046	5354	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0047	5353	1	0	1	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0048	5353	1	0	0	0	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0049	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0050	5353	1	0	0	0	0	1	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0051	5353	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0052	5355	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0053	5354	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0054	5355	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0055	5354	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0056	5354	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0057	5353	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	t0058	5353	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG4_chr13_108202442_108220536	1/1	t0001	1246	250	46	45	126	9	22	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0002	1246	51	19	7	21	2	2	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0003	1246	28	6	9	0	3	10	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0004	1242	17	2	14	0	1	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0005	1253	8	8	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0006	1246	7	3	1	1	1	1	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0007	1246	3	3	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0008	1253	3	3	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0009	1246	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0010	1246	1	1	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0011	1246	1	0	1	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0012	1246	1	0	1	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0013	1246	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0014	1234	1	0	0	0	0	1	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	t0015	1246	1	1	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LILRA1_chr19_54588632_54607381	0/0	t0001	1763	170	26	39	75	6	24	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0002	1763	108	13	19	66	4	6	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0003	1763	55	2	8	45	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0004	1763	13	6	3	0	1	3	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0005	1763	10	0	2	3	3	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0006	1763	9	7	0	0	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0007	1763	9	2	7	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0008	1763	8	8	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0009	1763	8	3	1	3	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0010	1763	7	0	0	7	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0011	1837	7	4	0	0	0	3	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0012	1763	4	0	0	4	0	0	copy fasta	LILRA1	chr19	54588632	54607381