Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABI3BP_chr3_100744156_100998421	1/0	t0007	1377	12	10	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0008	1424	10	0	1	9	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0009	1385	6	6	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0010	1385	5	4	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0011	1377	5	5	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0012	1385	3	3	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0013	1420	3	2	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0014	1428	3	0	0	3	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0015	1381	3	1	2	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0016	1420	3	2	0	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0017	1403	2	2	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0018	1428	2	0	0	2	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0019	1421	2	1	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0020	1420	2	2	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0021	1381	2	0	1	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0022	1385	2	2	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0023	1389	1	0	0	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0024	1389	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0025	1385	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0026	1377	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0027	1428	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0028	1385	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0029	1416	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0030	1416	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0031	1385	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0032	1420	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0033	1416	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0034	1377	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0035	1416	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0036	1377	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0037	1416	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0038	1420	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0039	1412	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0040	1424	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3_chr17_49205707_49228225	1/1	t0001	529	440	95	80	204	16	43	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	t0002	529	6	1	2	0	0	3	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	t0003	529	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	t0004	512	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	1/1	t0001	1356	337	89	48	153	10	35	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0002	1360	95	1	26	59	4	5	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0003	1357	8	0	0	8	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0004	1356	5	5	0	0	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0005	1356	5	0	2	0	2	1	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0006	1356	2	0	2	0	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0007	1356	1	1	0	0	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0008	1360	1	0	0	1	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0009	1356	1	0	1	0	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0010	1356	1	0	0	1	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0011	1356	1	0	1	0	0	0	copy fasta	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	0/0	t0012	1356	1	0	0	0	0	1	copy fasta	ABITRAM	chr9	108929400	108945954