Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APC_chr5_112732885_112851239	0/0	t0003	2174	40	10	2	24	0	4	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0004	2174	28	17	8	0	0	3	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0005	2174	11	11	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0006	2173	9	8	1	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0007	2174	3	3	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0008	2174	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0009	2174	2	1	1	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0010	2173	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0011	2174	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0012	2174	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0013	2174	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0014	2173	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	t0015	2174	1	0	0	0	1	0	copy fasta	APC	chr5	112732885	112851239
APEH_chr3_49669351_49688971	1/1	t0001	681	303	79	64	106	18	34	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	t0002	681	12	12	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	t0003	681	1	1	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	t0004	681	1	0	0	1	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	t0005	681	1	0	0	1	0	0	copy fasta	APEH	chr3	49669351	49688971
APELA_chr4_164872178_164902527	1/1	t0001	2267	290	31	55	153	13	36	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0002	2267	47	2	7	26	3	9	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0003	2267	34	22	3	8	1	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0004	2267	8	8	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0005	2267	7	5	2	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0006	2266	4	4	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0007	2267	4	4	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0008	2267	4	4	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0009	2266	3	3	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0010	2266	3	2	1	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0011	2267	3	0	0	3	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0012	2266	3	3	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0013	2266	3	2	1	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0014	2267	2	0	2	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0015	2267	2	0	1	0	0	1	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0016	2266	2	2	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0017	2267	2	2	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0018	2267	1	0	0	0	0	1	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0019	2267	1	0	1	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0020	2267	1	0	0	1	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0021	2266	1	1	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0022	2267	1	0	0	1	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0023	2267	1	1	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0024	2267	1	0	1	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0025	2267	1	0	0	0	0	1	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0026	2267	1	0	0	1	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0027	2267	1	1	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0028	2267	1	0	0	0	1	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0029	2267	1	0	0	1	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	t0030	2266	1	1	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APEX1_chr14_20450226_20462767	1/1	t0001	497	462	94	79	227	17	43	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	t0002	497	4	0	0	4	0	0	copy fasta	APEX1	chr14	20450226	20462767