JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRA1_chr19_54588632_54607381	0/1	t0013	1763	4	0	2	0	1	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0014	1763	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0015	1837	3	2	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0016	1800	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0017	1763	3	0	0	0	1	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0018	1763	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0019	1763	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0020	1800	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0021	1763	2	0	0	0	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0022	1763	2	0	1	0	1	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0023	1689	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0024	1763	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0025	1726	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0026	1874	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0027	1763	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0028	1763	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0029	1763	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0030	1763	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0031	1763	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0032	1763	1	0	0	0	1	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0033	1763	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0034	1763	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0035	1763	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0036	1763	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0037	1763	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0038	1763	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0039	1763	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	t0040	1763	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA2_chr19_54568790_54595287	0/0	t0001	3031	152	16	28	73	12	23	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/1	t0002	3029	82	21	22	29	2	7	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0003	3029	60	3	8	47	0	2	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0004	3029	30	0	13	13	1	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0005	3033	8	0	2	1	1	4	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0006	3030	8	7	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0007	3030	7	7	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0008	3031	7	0	2	0	2	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0009	3031	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0010	3030	5	0	0	5	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0011	3031	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0012	3031	4	4	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0013	3031	4	4	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0014	3032	4	0	1	3	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0015	3031	4	4	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0016	3032	3	0	0	0	0	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0017	3031	3	0	0	3	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0018	3030	2	0	0	1	0	1	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0019	3030	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0020	3031	2	1	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0021	3028	2	1	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0022	3030	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287