JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRA2_chr19_54568790_54595287	0/0	t0023	3031	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0024	3030	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0025	3032	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0026	3031	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0027	3030	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0028	3033	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0029	3031	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0030	3033	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0031	3032	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0032	3031	1	0	0	0	0	1	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0033	3031	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0034	3029	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0035	3029	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0036	3030	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0037	3029	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0038	3029	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0039	3029	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0040	3031	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0041	3031	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0042	3029	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0043	3029	1	0	0	0	0	1	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0044	3029	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0045	3030	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	t0046	3030	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA4_chr19_54328185_54344162	0/1	t0001	457	347	40	66	189	13	38	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0002	457	74	35	16	11	3	9	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0003	457	19	0	2	16	0	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0004	457	9	8	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0005	456	9	8	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0006	457	3	0	2	0	1	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0007	457	2	2	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0008	457	2	1	0	0	1	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0009	457	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0010	457	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0011	457	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0012	457	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0013	457	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	t0014	456	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA5_chr19_54302070_54318166	0/0	t0001	491	148	18	25	91	3	11	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0002	492	78	9	13	44	3	9	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0003	493	76	30	19	11	4	12	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0004	490	31	21	5	3	1	1	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/1	t0005	489	30	1	10	5	5	8	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0006	485	10	1	0	9	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0007	492	10	10	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0008	494	9	4	2	1	0	2	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0009	495	8	0	0	5	0	3	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0010	491	2	0	0	2	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0011	491	1	0	1	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0012	491	1	0	1	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166