JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRA5_chr19_54302070_54318166	0/0	t0013	491	1	0	1	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0014	491	1	0	0	1	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0015	491	1	1	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0016	493	1	0	1	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	t0017	493	1	1	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA6_chr19_54231590_54247790	1/0	t0001	2403	106	11	19	64	3	8	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0002	2403	91	8	9	71	1	2	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0003	2403	54	4	17	21	2	10	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/1	t0004	2403	27	2	2	22	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0005	2400	16	0	3	0	1	12	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0006	2401	16	16	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0007	2401	14	0	6	6	0	2	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0008	2401	11	4	4	1	1	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0009	2403	7	6	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0010	2401	7	0	0	7	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0011	2403	7	2	1	0	2	2	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0012	2403	7	2	1	0	2	2	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0013	2403	5	2	0	2	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0014	21602	5	0	0	5	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0015	2401	4	4	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0016	2400	4	0	1	0	0	3	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0017	21600	3	0	2	0	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0018	2401	3	3	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0019	2403	3	0	0	3	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0020	2401	3	3	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0021	2401	2	2	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0022	2401	2	2	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0023	2403	2	0	2	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0024	2403	2	0	2	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0025	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0026	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0027	2400	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0028	2401	1	0	0	0	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0029	21601	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0030	21600	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0031	21600	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0032	2401	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0033	21600	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0034	2401	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0035	21602	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0036	21600	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0037	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0038	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0039	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0040	2401	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0041	21606	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0042	2400	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0043	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0044	2403	1	0	0	0	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0045	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790