JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRA6_chr19_54231590_54247790	0/0	t0046	2404	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0047	2401	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0048	21600	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0049	2403	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0050	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0051	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0052	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0053	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0054	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0055	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0056	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0057	2400	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0058	2401	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0059	2401	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0060	2431	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0061	2400	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0062	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0063	2403	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0064	2403	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0065	2403	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0066	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0067	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0068	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0069	2400	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0070	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0071	2403	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0072	2401	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	t0073	2401	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRB1_chr19_54625484_54643022	0/0	t0001	1343	169	28	27	104	2	8	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/1	t0002	1343	144	32	32	47	8	24	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0003	1343	31	0	1	26	2	2	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0004	1342	13	1	5	5	1	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0005	1342	10	0	3	6	1	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0006	1343	10	0	2	3	3	2	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0007	1343	9	4	2	1	1	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0008	1344	7	7	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0009	1339	7	7	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0010	1342	4	3	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0011	1343	3	3	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0012	1342	3	0	0	0	0	3	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0013	1344	2	1	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0014	1344	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0015	1343	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0016	1343	2	1	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0017	1343	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0018	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0019	1343	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0020	1343	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0021	1339	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0022	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022