JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRB1_chr19_54625484_54643022	0/0	t0023	1343	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0024	1343	1	0	0	0	0	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0025	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0026	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0027	1343	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0028	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0029	1343	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0030	1342	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0031	1344	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0032	1343	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	t0033	1343	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB2_chr19_54268812_54286110	0/0	t0001	1070	129	6	10	102	5	6	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0002	1068	64	17	17	25	1	4	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0003	1066	42	27	2	13	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0004	1068	35	4	15	2	4	10	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0005	1068	30	12	7	0	3	8	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0006	1070	28	12	6	5	3	2	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/1	t0007	1068	21	1	9	0	2	8	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0008	1069	16	0	7	6	0	3	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0009	1068	12	0	0	11	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0010	1070	7	5	1	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0011	1072	6	0	0	5	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0012	1057	5	0	0	2	0	3	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0013	1066	4	4	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0014	1068	3	3	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0015	1074	3	0	0	3	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0016	1066	3	0	1	0	0	2	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0017	1072	3	3	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0018	1072	3	2	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0019	1069	2	0	2	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0020	1069	2	0	2	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0021	1066	2	0	0	2	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0022	1070	2	0	0	2	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0023	1070	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0024	1074	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0025	1070	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0026	1070	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0027	1074	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0028	12348	1	0	0	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	t0029	1061	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB3_chr19_54211278_54228007	0/1	t0001	847	261	34	58	120	11	37	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0002	847	75	0	8	63	1	3	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0003	847	36	27	3	2	1	3	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0004	847	10	7	1	0	1	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0005	847	10	0	0	10	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0006	816	7	0	1	6	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0007	846	5	1	2	1	1	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0008	815	5	3	2	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0009	847	4	4	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0010	848	4	1	1	2	0	0	copy fasta	LILRB3	chr19	54211278	54228007