JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRB3_chr19_54211278_54228007	0/0	t0011	816	4	2	0	2	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0012	842	3	3	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0013	847	3	0	0	3	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0014	816	3	3	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0015	847	2	2	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0016	848	2	0	0	2	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0017	846	2	0	0	2	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0018	847	2	0	0	0	2	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0019	847	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0020	847	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0021	852	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0022	846	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0023	848	1	0	1	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0024	847	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0025	846	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0026	847	1	0	1	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0027	848	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0028	847	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0029	847	1	0	0	0	1	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0030	847	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0031	847	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0032	847	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0033	846	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0034	847	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	t0035	847	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB4_chr19_54657985_54673718	0/1	t0001	749	471	99	79	233	16	43	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0002	749	10	0	5	0	1	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0003	749	2	0	1	0	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0004	749	1	0	0	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0005	749	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0006	749	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	t0007	749	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB5_chr19_54244421_54262273	0/0	t0001	1446	196	13	20	146	8	9	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0002	1452	52	5	13	25	2	7	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0003	1446	35	17	2	16	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0004	1446	27	2	13	11	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0005	1447	24	3	12	3	3	3	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0006	1447	17	0	5	6	2	4	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0007	1452	13	0	5	1	1	6	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0008	1447	13	13	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0009	1446	10	5	0	4	1	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0010	1446	10	2	1	7	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0011	1451	7	7	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0012	1447	5	5	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0013	1447	5	0	0	2	0	3	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0014	1447	4	0	3	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0015	1452	3	0	0	0	1	2	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0016	1446	3	2	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0017	1446	3	0	0	3	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0018	1451	3	0	2	1	0	0	copy fasta	LILRB5	chr19	54244421	54262273