JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LILRB5_chr19_54244421_54262273	0/0	t0019	1446	3	0	0	3	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0020	1447	3	1	0	1	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0021	1452	2	1	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0022	1452	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0023	1446	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0024	1447	2	0	1	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0025	1771	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0026	1771	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0027	1446	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0028	1452	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0029	1447	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0030	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0031	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0032	1447	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0033	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0034	1446	1	0	0	1	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0035	1452	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0036	1446	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0037	1771	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0038	1772	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0039	1446	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0040	1452	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0041	1446	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0042	1446	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0043	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0044	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0045	1447	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0046	1446	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0047	1447	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0048	1447	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0049	1447	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0050	1447	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	t0051	1447	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LIM2_chr19_51374909_51392974	1/1	t0001	355	426	90	84	186	18	46	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	t0002	355	5	5	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	t0003	355	2	0	0	2	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	t0004	355	2	2	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	t0005	355	2	2	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	t0006	355	1	1	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIMA1_chr12_50170788_50288520	0/0	t0001	1401	135	36	23	63	1	12	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/1	t0002	1401	57	17	19	2	6	12	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	1/0	t0003	1401	42	11	2	28	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0004	1401	42	8	9	13	3	9	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0005	1401	5	5	0	0	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0006	1412	4	3	1	0	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0007	1401	3	0	0	3	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0008	1401	2	0	0	2	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0009	1413	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0010	1401	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	t0011	1401	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520