JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMA1_chr12_50170788_50288520	0/0	t0012	1401	1	0	0	0	0	1	copy fasta	LIMA1	chr12	50170788	50288520
LIMCH1_chr4_41533157_41705044	1/1	t0001	3294	61	23	15	9	0	12	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0002	3293	10	7	2	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0003	3294	10	0	5	0	0	5	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0004	3294	8	3	2	2	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0005	3293	8	2	2	4	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0006	3295	8	3	2	1	0	2	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0007	3291	3	0	1	0	0	2	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0008	3293	3	1	0	2	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0009	3293	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0010	3294	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0011	3294	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0012	3294	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0013	3293	2	1	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0014	3293	2	1	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0015	3293	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0016	3294	2	0	0	2	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0017	3294	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0018	3294	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0019	3294	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0020	3294	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0021	3293	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0022	3294	1	0	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0023	3293	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0024	3293	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0025	3293	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0026	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0027	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0028	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0029	3295	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0030	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0031	3293	1	0	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0032	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0033	3295	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	t0034	3294	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMD1_chr3_45589751_45691341	0/0	t0001	9375	39	3	7	25	0	4	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0002	9388	12	0	0	11	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0003	9386	12	1	2	8	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0004	9375	10	0	0	10	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0005	9377	8	1	1	4	0	2	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0006	9388	7	0	1	5	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0007	9353	7	0	3	4	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0008	9381	5	0	3	1	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0009	9385	5	5	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0010	9367	5	0	0	5	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0011	9394	4	4	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0012	9379	4	0	0	2	0	2	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0013	9388	4	0	0	4	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0014	9390	3	0	3	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0015	9435	3	0	0	3	0	0	copy fasta	LIMD1	chr3	45589751	45691341