JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMD1_chr3_45589751_45691341	0/0	t0016	9386	3	0	1	0	2	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0017	9382	3	0	3	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0018	9366	3	0	0	2	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0019	9443	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0020	9420	2	1	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0021	9414	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0022	9412	2	0	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0023	9415	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0024	9399	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0025	9408	2	1	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0026	9395	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0027	9407	2	0	1	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0028	9404	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0029	9400	2	0	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0030	9402	2	0	1	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0031	9402	2	0	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0032	9400	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0033	9400	2	0	1	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0034	9398	2	0	0	0	2	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0035	9399	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0036	9396	2	0	1	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0037	9392	2	0	1	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0038	9438	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0039	9387	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0040	9438	2	0	0	1	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0041	9436	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0042	9434	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0043	9388	2	0	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0044	9389	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0045	9375	2	0	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0046	9388	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0047	9373	2	0	1	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0048	9382	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0049	9370	2	0	0	0	2	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0050	9355	2	0	1	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0051	9464	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0052	9464	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0053	9456	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0054	9454	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0055	9449	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0056	9441	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0057	9437	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0058	9434	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0059	9432	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0060	9432	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0061	9432	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0062	9432	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0063	9428	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0064	9428	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0065	9428	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341