JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMD1_chr3_45589751_45691341	0/0	t0066	9426	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0067	9422	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0068	9426	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0069	9399	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0070	9424	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0071	9425	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0072	9422	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0073	9418	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0074	9421	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0075	9420	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0076	9421	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0077	9419	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0078	9418	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0079	9416	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/1	t0080	9418	1	0	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0081	9419	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0082	9417	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0083	9414	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0084	9414	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0085	9417	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0086	9417	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0087	9414	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0088	9410	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0089	9401	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0090	9401	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0091	9410	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0092	9412	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0093	9413	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	1/0	t0094	9412	1	0	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0095	9410	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0096	9410	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0097	9413	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0098	9410	1	0	0	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0099	9410	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0100	9410	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0101	9411	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0102	9406	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0103	9408	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0104	9397	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0105	9397	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0106	9411	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0107	9408	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0108	9404	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0109	9406	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0110	9406	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0111	9409	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0112	9406	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0113	9393	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0114	9404	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0115	9391	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341