JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMD1_chr3_45589751_45691341	0/0	t0116	9402	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0117	9403	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0118	9421	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0119	9396	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0120	9387	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0121	9398	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0122	9485	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0123	9448	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0124	9398	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0125	9398	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0126	9385	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0127	9398	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0128	9489	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0129	9440	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0130	9392	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0131	9383	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0132	9396	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0133	9392	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0134	9450	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0135	9383	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0136	9394	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0137	9395	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0138	9490	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0139	9483	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0140	9436	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0141	9393	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0142	9390	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0143	9432	1	0	0	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0144	9392	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0145	9390	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0146	9379	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0147	9379	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0148	9390	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0149	9442	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0150	9440	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0151	9438	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0152	9434	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0153	9432	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0154	9418	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0155	9393	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0156	9390	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0157	9390	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0158	9390	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0159	9400	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0160	9390	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0161	9377	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0162	9377	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0163	9377	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0164	9440	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0165	9437	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341