JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMK2_chr22_31207298_31285080	0/0	t0009	1751	2	0	0	0	0	2	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0010	1751	2	1	1	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0011	1751	1	0	0	0	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0012	1751	1	0	1	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0013	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0014	1751	1	0	0	1	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0015	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0016	1751	1	0	0	1	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0017	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0018	1751	1	0	0	1	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0019	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0020	1751	1	0	0	1	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0021	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0022	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0023	1751	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMS1_chr2_108529470_108692246	0/1	t0001	3342	63	9	12	25	6	10	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0002	3342	51	20	8	12	2	9	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0003	3341	44	24	10	6	2	2	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0004	3342	21	1	0	11	0	9	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0005	3343	11	1	7	0	0	3	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0006	3342	9	0	3	0	2	4	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0007	3341	5	5	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0008	3341	4	4	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0009	3341	4	0	1	3	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	1/0	t0010	3341	4	3	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0011	3341	4	0	0	1	0	3	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0012	3342	3	2	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0013	3342	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0014	3341	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0015	3340	2	1	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0016	3342	2	0	0	2	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0017	3342	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0018	3342	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0019	3342	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0020	3342	1	0	0	0	0	1	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0021	3342	1	0	1	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0022	3342	1	0	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0023	3341	1	0	1	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0024	3342	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0025	3342	1	0	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0026	3342	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0027	3341	1	0	1	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0028	3341	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0029	3341	1	1	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	t0030	3342	1	0	0	0	0	1	copy fasta	LIMS1	chr2	108529470	108692246
LIMS2_chr2_127633426_127680530	1/1	t0001	1362	78	4	29	38	1	4	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0002	1362	50	21	8	10	2	9	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0003	1366	29	3	6	16	1	3	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0004	1372	21	7	0	5	1	8	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0005	1368	20	0	2	16	1	1	copy fasta	LIMS2	chr2	127633426	127680530