JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMS2_chr2_127633426_127680530	0/0	t0006	1362	12	1	1	9	0	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0007	1368	11	7	2	0	1	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0008	1368	11	0	3	6	0	2	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0009	1368	11	7	2	0	0	2	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0010	1362	11	6	3	2	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0011	1366	11	5	2	2	0	2	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0012	1368	9	2	0	6	0	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0013	1372	8	1	2	1	1	3	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0014	1364	7	2	5	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0015	1358	7	3	2	0	2	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0016	1364	5	0	5	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0017	1363	5	1	1	0	3	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0018	1368	4	3	1	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0019	1358	4	4	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0020	1362	3	0	1	0	0	2	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0021	1368	2	2	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0022	1368	2	1	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0023	1362	2	2	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0024	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0025	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0026	1372	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0027	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0028	1359	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0029	1359	1	0	1	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0030	1359	1	0	1	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0031	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0032	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0033	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0034	1368	1	0	0	0	0	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0035	1368	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0036	1368	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0037	1368	1	0	0	0	1	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0038	1362	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0039	1368	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0040	1366	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0041	1362	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0042	1358	1	0	1	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0043	1362	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0044	1358	1	0	0	0	0	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0045	1362	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0046	1362	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0047	1366	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	t0048	1362	1	0	0	0	0	1	copy fasta	LIMS2	chr2	127633426	127680530
LIMS3_chr2_109893688_109930625	0/0	t0001	898	17	16	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	t0002	899	3	2	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	t0003	898	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	t0004	898	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS4_chr2_110440883_110477816	0/0	t0001	895	55	9	13	18	6	9	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0002	896	11	6	2	0	0	3	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0003	896	5	4	1	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816