JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMS4_chr2_110440883_110477816	0/0	t0004	897	5	0	0	3	0	2	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0005	896	4	0	1	3	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0006	894	4	1	0	3	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0007	896	2	2	0	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0008	895	1	1	0	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0009	896	1	0	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0010	895	1	0	1	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	t0011	895	1	1	0	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIN28A_chr1_26405817_26434728	0/0	t0001	3345	169	45	23	81	1	19	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0002	3346	74	11	24	23	1	15	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0003	3346	38	9	6	18	1	4	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/1	t0004	3345	27	6	11	1	7	1	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	1/0	t0005	3346	18	8	2	0	4	3	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0006	3345	13	5	3	2	1	2	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0007	3344	8	1	0	5	0	2	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0008	3345	2	2	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0009	3345	2	2	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0010	3346	2	0	2	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0011	3345	2	2	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0012	3346	2	1	1	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0013	3345	2	0	1	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0014	3345	2	0	2	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0015	3346	2	0	1	0	0	1	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0016	3346	1	0	0	0	0	1	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0017	3345	1	1	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0018	3345	1	1	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0019	3345	1	1	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0020	3345	1	1	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0021	3345	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0022	3347	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0023	3345	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0024	3345	1	0	0	0	0	1	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0025	3346	1	0	1	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0026	3346	1	0	1	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0027	3346	1	0	0	0	1	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	t0028	3346	1	0	0	0	0	1	copy fasta	LIN28A	chr1	26405817	26434728
LIN28B_chr6_104952107_105088332	0/0	t0001	4694	76	15	11	32	7	11	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	1/0	t0002	4694	64	19	7	27	5	5	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0003	4692	55	1	10	35	1	8	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/1	t0004	4694	28	15	4	0	3	5	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0005	4694	12	11	1	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0006	4694	7	7	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0007	4694	5	5	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0008	4694	3	0	0	3	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0009	4694	3	3	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0010	4694	3	0	3	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0011	4692	3	0	0	3	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0012	4694	2	0	1	0	0	1	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0013	4694	2	2	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0014	4694	2	2	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332