JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIN28B_chr6_104952107_105088332	0/0	t0015	4694	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0016	4694	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0017	4694	1	0	0	0	0	1	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0018	4694	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0019	4694	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0020	4694	1	0	1	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0021	4694	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0022	4692	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0023	4694	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0024	4694	1	0	0	0	0	1	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0025	4694	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0026	4694	1	0	0	1	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	t0027	4694	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN37_chr19_35743576_35759519	1/0	t0001	195	271	45	46	130	13	36	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	t0002	195	60	39	4	15	0	2	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/1	t0003	195	49	10	16	15	1	6	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	t0004	195	27	0	0	27	0	0	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	t0005	195	1	0	0	1	0	0	copy fasta	LIN37	chr19	35743576	35759519
LIN52_chr14_74079956_74206493	0/0	t0001	2835	72	24	22	15	5	6	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0002	2537	53	9	7	31	2	4	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/1	t0003	2535	43	1	5	32	1	3	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0004	2536	33	10	5	17	0	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0005	2839	21	0	4	11	0	6	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0006	2538	19	3	1	12	0	3	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0007	2537	15	0	0	9	0	6	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0008	2841	15	0	12	1	1	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0009	2534	10	10	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0010	2538	7	0	1	2	1	3	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0011	2534	6	6	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0012	2537	5	3	2	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0013	2537	4	0	1	0	0	3	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0014	2535	4	4	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0015	2537	4	2	0	2	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0016	2534	4	0	0	4	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0017	2835	3	0	2	0	1	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0018	2837	3	2	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0019	2536	2	0	0	2	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0020	2524	2	0	2	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0021	2537	2	2	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0022	2535	2	0	0	2	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0023	2833	2	0	1	0	1	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0024	2835	2	0	0	0	0	2	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0025	2536	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0026	2537	1	0	0	0	0	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0027	2534	1	0	0	0	0	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0028	2538	1	0	0	0	0	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0029	2534	1	0	0	0	0	1	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0030	2539	1	0	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	1/0	t0031	2536	1	0	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0032	2535	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493