JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIN52_chr14_74079956_74206493	0/0	t0033	2535	1	0	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0034	2539	1	0	1	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0035	2522	1	0	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0036	2537	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0037	2538	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0038	2536	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0039	2536	1	0	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0040	2536	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0041	2840	1	0	1	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0042	2839	1	0	1	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0043	2835	1	0	0	1	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0044	2837	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	t0045	2537	1	1	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN54_chr4_82919603_83015823	0/0	t0001	3866	107	27	14	55	2	9	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0002	3872	83	8	20	43	2	10	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0003	3869	52	5	5	32	2	8	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0004	3869	8	7	1	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0005	3873	5	0	1	4	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0006	3869	5	0	0	5	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0007	3870	4	4	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0008	3872	4	4	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0009	3870	3	3	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0010	3869	3	3	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0011	3866	2	2	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0012	3867	2	1	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0013	3870	2	2	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0014	3872	2	2	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0015	3872	2	2	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0016	3869	2	0	2	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0017	3866	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0018	3866	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0019	3866	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0020	3872	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0021	3869	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0022	3873	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0023	3872	1	0	0	0	0	1	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0024	3872	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0025	3872	1	0	0	0	0	1	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0026	3872	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0027	3872	1	0	0	0	0	1	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/1	t0028	3872	1	0	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0029	3872	1	0	1	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	1/0	t0030	3872	1	0	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0031	3873	1	0	0	0	0	1	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0032	3872	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0033	3869	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	t0034	3869	1	0	0	0	0	1	copy fasta	LIN54	chr4	82919603	83015823
LIN7A_chr12_80787520_80942934	1/1	t0001	5420	189	28	54	74	6	25	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0002	5420	32	2	5	20	0	5	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0003	5420	23	23	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934