JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIN7A_chr12_80787520_80942934	0/0	t0004	5420	11	9	2	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0005	5420	7	7	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0006	5420	4	0	0	4	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0007	5421	3	0	3	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0008	5420	2	1	1	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0009	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0010	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0011	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0012	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0013	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0014	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0015	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0016	5420	1	0	0	0	0	1	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0017	5420	1	0	1	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0018	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0019	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0020	5420	1	0	0	0	0	1	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0021	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0022	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0023	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0024	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0025	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0026	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0027	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0028	5420	1	0	0	1	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7A_chr12_80787520_80942934	0/0	t0029	5420	1	1	0	0	0	0	copy fasta	LIN7A	chr12	80787520	80942934
LIN7B_chr19_49109370_49123460	1/1	t0001	123	375	90	76	145	16	46	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	t0002	123	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7C_chr11_27489418_27511769	0/1	t0001	4250	105	2	14	70	4	14	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	1/0	t0002	4249	83	19	25	32	4	2	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0003	4248	56	7	2	47	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0004	4249	55	19	10	10	4	12	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0005	4249	11	11	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0006	4249	11	0	6	5	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0007	4249	10	0	0	9	1	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0008	4249	4	0	4	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0009	4250	4	3	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0010	4248	3	0	0	3	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0011	4249	3	2	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0012	4250	3	0	0	3	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0013	4250	3	0	0	0	0	3	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0014	4249	3	0	0	3	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0015	4249	2	2	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0016	4249	2	2	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0017	4249	2	0	2	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0018	4250	2	0	1	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0019	4251	2	1	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0020	4248	2	2	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0021	4239	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0022	4249	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769