JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIN7C_chr11_27489418_27511769	0/0	t0023	4249	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0024	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0025	4250	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0026	4248	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0027	4248	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0028	4248	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0029	4250	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0030	4250	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0031	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0032	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0033	4261	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0034	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0035	4249	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0036	4248	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0037	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0038	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0039	4249	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0040	4249	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0041	4249	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0042	4249	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0043	4250	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0044	4250	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0045	4250	1	0	0	0	1	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0046	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0047	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0048	4250	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0049	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0050	4251	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0051	4249	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0052	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0053	4250	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0054	4250	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0055	4249	1	0	1	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0056	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0057	4249	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0058	4249	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0059	4249	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	t0060	4249	1	1	0	0	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN9_chr1_226226157_226314164	0/1	t0001	1370	217	57	44	87	3	25	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	1/0	t0002	1370	95	19	18	38	3	16	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	t0003	1370	45	0	5	35	2	3	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	t0004	1370	3	0	3	0	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	t0005	1370	2	0	0	2	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	t0006	1370	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	t0007	1370	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LINGO1_chr15_77608027_77637912	0/0	t0001	1615	129	39	23	56	4	7	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	1/0	t0002	1615	68	6	24	20	7	10	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/1	t0003	1615	68	8	22	24	5	8	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0004	1615	49	3	2	35	0	9	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0005	1615	10	0	5	4	1	0	copy fasta	LINGO1	chr15	77608027	77637912