Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APH1B_chr15_63272605_63314126	0/0	t0020	3365	1	0	0	0	1	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0021	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0022	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0023	3365	1	0	0	0	0	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/1	t0024	3365	1	0	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0025	3365	1	0	0	0	0	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0026	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0027	3365	1	1	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0028	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0029	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0030	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	1/0	t0031	3365	1	0	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0032	3365	1	0	0	0	0	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0033	3365	1	0	0	0	0	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0034	3365	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0035	3365	1	0	1	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
API5_chr11_43306996_43349529	0/1	t0001	2152	338	61	63	158	13	42	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0002	2152	25	12	2	6	3	2	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	1/0	t0003	2152	6	5	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0004	2150	4	3	1	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0005	2152	2	2	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0006	2152	2	0	0	2	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0007	2152	2	2	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0008	2152	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0009	2152	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0010	2152	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0011	2152	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	t0012	2152	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
APIP_chr11_34877295_34921379	0/0	t0001	518	155	16	31	88	4	16	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0002	518	93	22	18	37	3	13	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/1	t0003	518	53	28	9	2	2	11	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0004	518	49	25	6	16	1	1	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0005	518	2	0	2	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0006	518	1	1	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0007	518	1	0	0	0	0	1	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	t0008	518	1	0	0	1	0	0	copy fasta	APIP	chr11	34877295	34921379
APLF_chr2_68462585_68585162	1/1	t0001	2288	90	29	20	19	3	17	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0002	2288	21	19	2	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0003	2288	13	0	2	7	2	2	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0004	2288	12	5	5	0	1	1	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0005	2288	9	9	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0006	2281	8	8	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0007	2288	6	3	3	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0008	2288	3	2	1	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0009	2288	3	3	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0010	2288	3	3	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0011	2288	2	0	0	2	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0012	2281	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0013	2288	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0014	2288	1	0	1	0	0	0	copy fasta	APLF	chr2	68462585	68585162