JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LINGO1_chr15_77608027_77637912	0/0	t0006	1615	9	4	0	4	0	1	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0007	1615	8	5	2	0	1	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0008	1615	5	5	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0009	1615	5	5	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0010	1615	4	0	0	3	0	1	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0011	1615	3	2	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0012	1621	3	2	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0013	1615	3	0	0	3	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0014	1615	2	2	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0015	1615	2	2	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0016	1615	2	2	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0017	1615	2	1	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0018	1600	2	2	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0019	1615	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0020	1615	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0021	1615	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0022	1615	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0023	1615	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0024	1615	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0025	1615	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0026	1615	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0027	1615	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0028	1615	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0029	1615	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	t0030	1621	1	1	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO2_chr9_27932617_29218601	0/0	t0001	12409	12	2	3	7	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0002	12430	5	1	1	3	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0003	12405	4	0	0	4	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0004	12406	3	1	1	1	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0005	12409	3	3	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0006	12408	2	2	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0007	12409	2	0	1	1	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0008	12408	2	2	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0009	12410	2	2	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0010	12406	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0011	12410	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0012	12409	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0013	12405	1	0	0	0	0	1	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0014	12430	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0015	12406	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0016	12430	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0017	12405	1	0	0	1	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0018	12410	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0019	12411	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0020	12430	1	0	0	1	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0021	12407	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0022	12408	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0023	12430	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0024	12410	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0025	12410	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601