JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LINGO2_chr9_27932617_29218601	0/0	t0026	12409	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0027	12406	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0028	12410	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0029	12407	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0030	12410	1	0	0	0	0	1	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0031	12409	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0032	12409	1	0	1	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0033	12406	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0034	12411	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0035	12406	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	t0036	12406	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO3_chr19_2282164_2313154	0/0	t0001	2963	67	7	20	27	8	5	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0002	2958	53	9	9	32	1	2	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0003	2959	50	0	6	39	0	5	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	1/0	t0004	2960	46	5	7	25	1	7	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0005	2959	27	24	3	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0006	2961	21	6	6	5	1	3	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0007	2958	16	0	2	10	1	3	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0008	2966	15	2	2	5	1	5	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0009	2961	11	0	3	3	1	4	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0010	2963	9	2	5	0	1	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0011	2962	7	0	1	4	0	2	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0012	2962	6	4	1	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0013	2963	5	0	1	4	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0014	2961	5	0	0	5	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0015	2964	4	0	2	2	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0016	2964	4	3	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0017	2958	4	1	3	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0018	2958	3	3	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0019	2955	3	3	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0020	2969	2	0	0	1	1	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0021	2964	2	0	0	0	0	2	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0022	2963	2	0	2	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0023	2961	2	2	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0024	2959	2	2	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0025	2950	2	2	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0026	2949	2	2	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0027	2958	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0028	3075	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0029	3032	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0030	3026	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0031	3021	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0032	3032	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0033	2978	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0034	2975	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0035	2973	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0036	2973	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0037	2970	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0038	2970	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0039	2968	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154