JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LINGO3_chr19_2282164_2313154	0/0	t0040	2967	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0041	2967	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0042	2967	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0043	2964	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0044	2964	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0045	2966	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0046	2966	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0047	2965	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0048	2965	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0049	2966	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0050	2963	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0051	2941	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0052	2963	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0053	2963	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0054	2963	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0055	2983	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0056	2961	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0057	2971	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0058	2958	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0059	2960	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0060	2960	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/1	t0061	2960	1	0	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0062	2959	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0063	2958	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0064	2958	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0065	2959	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0066	2960	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0067	2955	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0068	2957	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0069	2956	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0070	2955	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0071	2956	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0072	2951	1	0	0	1	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0073	2950	1	0	0	0	0	1	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	t0074	2948	1	0	1	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO4_chr1_151795264_151810419	0/0	t0001	863	162	32	35	64	9	22	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/1	t0002	863	136	14	28	75	9	9	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0003	863	88	6	19	52	0	11	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0004	863	15	15	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0005	863	11	11	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	1/0	t0006	863	7	6	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0007	863	3	3	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0008	863	3	0	0	3	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0009	863	2	2	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0010	863	2	2	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0011	863	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0012	863	1	1	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0013	863	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0014	863	1	1	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	t0015	863	1	1	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419