JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LINS1_chr15_100561924_100607184	0/0	t0001	2482	87	18	17	44	1	7	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0002	2491	62	5	13	32	3	9	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	1/0	t0003	2482	61	6	2	50	0	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0004	2483	46	4	16	15	0	11	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/1	t0005	2483	39	2	10	13	5	8	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0006	2483	19	13	4	0	0	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0007	2484	11	10	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0008	2491	9	0	0	9	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0009	2483	9	7	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0010	2478	8	6	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0011	2491	8	6	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0012	2491	8	0	1	5	0	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0013	2482	8	5	2	0	0	1	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0014	2491	6	0	2	0	2	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0015	2492	5	0	0	4	0	1	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0016	2482	4	0	0	4	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0017	2484	4	4	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0018	2483	3	0	0	3	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0019	2483	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0020	2489	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0021	2491	2	0	0	2	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0022	2491	2	0	0	2	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0023	2492	2	0	1	0	0	1	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0024	2483	2	0	1	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0025	2483	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0026	2490	1	0	0	0	1	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0027	2490	1	0	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0028	2491	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0029	2491	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0030	2491	1	0	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0031	2491	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0032	2492	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0033	2492	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0034	2482	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0035	2482	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0036	2482	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0037	2483	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0038	2483	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0039	2483	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0040	2483	1	0	0	0	0	1	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0041	2483	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0042	2483	1	0	0	0	0	1	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0043	2485	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	t0044	2492	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LIPA_chr10_89208572_89256775	1/1	t0001	1296	282	32	52	152	8	36	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0002	1296	45	26	7	3	4	5	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0003	1296	23	13	6	0	0	4	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0004	1296	10	9	1	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0005	1296	7	0	0	7	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0006	1296	4	4	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775