JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIPA_chr10_89208572_89256775	0/0	t0007	1296	3	3	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0008	1296	2	0	0	0	0	2	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0009	1296	2	0	0	0	0	2	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0010	1296	1	0	1	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0011	1296	1	1	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0012	1296	1	0	0	1	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0013	1296	1	0	0	1	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0014	1296	1	0	0	0	0	1	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	t0015	1296	1	0	1	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPC_chr15_58426991_58574844	0/1	t0001	1060	151	38	19	72	6	15	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0002	1060	108	28	34	26	7	13	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0003	1060	76	4	9	42	3	18	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0004	1060	4	4	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	1/0	t0005	1060	4	3	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0006	1060	3	3	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0007	1060	3	3	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0008	1060	3	0	0	3	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0009	1060	2	0	2	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0010	1060	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0011	1060	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0012	1060	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	t0013	1060	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPE_chr19_42396514_42432388	1/1	t0001	538	225	78	58	54	6	27	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	t0002	538	2	2	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	t0003	538	1	0	0	0	0	1	copy fasta	LIPE	chr19	42396514	42432388
LIPF_chr10_88659442_88683814	1/1	t0001	195	413	90	76	184	18	43	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	t0002	195	1	0	0	0	0	1	copy fasta	LIPF	chr10	88659442	88683814
LIPG_chr18_49557057_49604185	0/0	t0001	8917	37	6	6	19	2	4	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0002	8917	30	0	2	22	0	6	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0003	8916	25	7	3	11	0	4	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0004	8918	17	0	0	17	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0005	8917	15	1	6	4	1	3	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0006	8916	11	0	4	5	1	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0007	8917	10	9	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0008	8917	10	0	7	3	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0009	8917	9	1	2	4	2	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0010	8916	8	0	2	0	2	4	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0011	8917	8	0	7	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	1/0	t0012	8916	8	0	2	0	2	3	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0013	8916	7	0	3	4	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0014	8918	6	6	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0015	8917	6	0	6	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0016	8910	5	5	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0017	8915	4	4	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0018	8918	4	0	0	3	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0019	8918	4	0	0	3	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0020	8916	3	0	1	0	0	2	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0021	8917	3	0	2	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0022	8918	3	0	0	3	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0023	8919	3	0	0	3	0	0	copy fasta	LIPG	chr18	49557057	49604185