JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIPG_chr18_49557057_49604185	0/0	t0024	8915	3	3	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0025	8917	3	0	0	3	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0026	8918	3	3	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0027	8916	3	0	1	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0028	8918	2	0	1	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0029	8917	2	2	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0030	8919	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0031	8917	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0032	8916	2	2	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0033	8915	2	2	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0034	8916	2	0	2	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0035	8917	2	0	2	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0036	8916	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0037	8918	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0038	8927	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0039	8915	2	2	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0040	8915	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0041	8918	2	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0042	8917	2	0	0	0	0	2	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0043	8917	2	0	0	2	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0044	8917	2	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0045	8918	2	2	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0046	8917	2	0	1	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0047	8916	2	0	0	1	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0048	8919	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0049	8917	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0050	8919	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0051	8916	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0052	8917	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0053	8916	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0054	8917	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0055	8917	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0056	8916	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0057	8917	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0058	8916	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0059	8917	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0060	8918	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0061	8916	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0062	8919	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0063	8917	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0064	8918	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0065	8917	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0066	8919	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0067	8917	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0068	8918	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0069	8920	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0070	8916	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0071	8905	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0072	8918	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0073	8918	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185