JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LIPG_chr18_49557057_49604185	0/1	t0074	8918	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0075	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0076	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0077	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0078	8914	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0079	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0080	8910	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0081	8919	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0082	8918	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0083	8915	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0084	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0085	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0086	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0087	8918	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0088	8919	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0089	8917	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0090	8916	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0091	8917	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0092	8918	1	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0093	8917	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0094	8926	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0095	8928	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0096	8928	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0097	8915	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0098	8925	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0099	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0100	8916	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0101	8918	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0102	8915	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0103	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0104	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0105	8915	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0106	8916	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0107	8918	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0108	8915	1	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0109	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0110	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0111	8915	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0112	8916	1	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0113	8916	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0114	8916	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0115	8915	1	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0116	8915	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0117	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0118	8918	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0119	8918	1	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0120	8918	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0121	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0122	8916	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0123	8917	1	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185