JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIPG_chr18_49557057_49604185	0/0	t0124	8917	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0125	8918	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0126	8918	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0127	8918	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0128	8916	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0129	8916	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0130	8919	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0131	8917	1	0	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0132	8917	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0133	8916	1	0	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0134	8918	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0135	8917	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0136	8917	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0137	8917	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0138	8918	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0139	8935	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0140	8918	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0141	8931	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0142	8917	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	t0143	8919	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPH_chr3_185501262_185557588	0/0	t0001	2644	91	18	19	38	7	9	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/1	t0002	2644	57	7	6	42	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0003	2645	45	20	5	15	0	5	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0004	2645	20	3	5	7	0	5	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	1/0	t0005	2646	16	8	1	5	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0006	2647	16	2	0	12	0	2	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0007	2644	16	2	6	8	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0008	2644	14	1	6	0	4	3	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0009	2648	14	4	1	8	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0010	2645	12	2	3	7	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0011	2649	10	4	1	3	0	2	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0012	2645	6	1	4	0	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0013	2643	4	3	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0014	2646	3	0	1	0	1	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0015	2647	3	0	0	0	0	3	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0016	2644	2	0	0	0	0	2	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0017	2645	2	1	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0018	2643	2	2	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0019	2643	2	0	0	1	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0020	2643	2	2	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0021	2644	2	0	0	0	0	2	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0022	2647	2	0	0	2	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0023	2643	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0024	2645	1	0	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0025	2642	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0026	2644	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0027	2644	1	0	0	0	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0028	2644	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0029	2644	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0030	2631	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588