JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIPH_chr3_185501262_185557588	0/0	t0031	2633	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0032	2642	1	0	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0033	2642	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0034	2645	1	0	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0035	2642	1	0	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0036	2643	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0037	2647	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0038	2648	1	0	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	t0039	2646	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPI_chr21_14103813_14215955	1/1	t0001	291	167	39	28	72	8	18	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0002	291	146	44	24	61	3	14	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0003	291	15	1	3	10	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0004	291	14	0	4	5	3	2	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0005	291	5	1	1	2	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0006	291	4	0	0	4	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0007	291	4	0	0	2	0	2	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0008	291	3	3	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0009	291	2	2	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0010	291	1	0	0	0	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	t0011	291	1	0	0	0	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPJ_chr10_88581762_88611976	1/1	t0001	384	387	70	76	180	18	41	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	t0002	384	13	8	0	2	0	3	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	t0003	384	7	7	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	t0004	384	2	2	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	t0005	384	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPK_chr10_88701249_88757776	1/1	t0001	104	350	88	56	152	16	36	copy fasta	LIPK	chr10	88701249	88757776
LIPM_chr10_88797730_88825546	1/1	t0001	213	420	94	71	192	18	43	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	t0002	213	40	0	7	30	0	3	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	t0003	213	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	t0004	213	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPN_chr10_88755020_88784626	0/0	t0001	1480	248	48	39	131	6	24	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0002	1480	35	11	3	9	4	8	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0003	1480	30	11	12	6	1	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0004	1480	16	0	7	8	0	1	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	1/0	t0005	1480	16	0	8	0	1	6	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0006	1480	8	6	2	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/1	t0007	1480	8	0	2	0	3	2	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0008	1480	8	0	0	8	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0009	1478	6	6	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0010	1480	3	3	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0011	1480	3	3	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0012	1480	3	0	0	3	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0013	1480	2	1	0	0	1	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0014	1480	2	2	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0015	1480	1	0	0	0	0	1	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0016	1480	1	0	0	1	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0017	1480	1	0	0	1	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0018	1480	1	0	1	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0019	1480	1	0	0	1	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	t0020	1480	1	1	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626