JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIPT1_chr2_99149967_99168137	1/1	t0001	144	404	89	78	172	15	48	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	t0002	144	1	1	0	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	t0003	144	1	0	0	0	1	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT2_chr11_74485519_74498724	0/1	t0001	1638	193	16	37	108	9	22	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0002	1638	171	35	32	80	4	20	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	1/0	t0003	1638	21	19	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0004	1638	19	18	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0005	1638	4	4	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0006	1638	2	1	0	0	1	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0007	1638	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0008	1638	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0009	1638	1	0	0	0	0	1	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0010	1638	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0011	1638	1	0	0	1	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0012	1638	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0013	1638	1	0	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0014	1638	1	0	0	1	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0015	1638	1	0	0	0	0	1	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	t0016	1681	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LITAFD_chr16_8877351_8890350	1/1	t0001	326	384	93	70	162	14	43	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	t0002	325	17	2	0	15	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	t0003	326	2	0	2	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	t0004	326	1	1	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	t0005	326	1	0	0	0	0	1	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	t0006	326	1	0	0	1	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAF_chr16_11542722_11591919	1/1	t0001	1955	170	19	40	78	9	22	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0002	1956	115	19	16	64	2	14	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0003	1954	44	16	0	21	0	7	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0004	1955	7	6	1	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0005	1956	7	6	1	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0006	1955	7	3	0	2	2	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0007	1954	7	7	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0008	1954	6	1	5	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0009	1955	5	0	0	4	0	1	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0010	1956	5	5	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0011	1954	3	0	0	0	1	2	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0012	1955	3	0	1	2	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0013	1956	3	0	0	3	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0014	1955	2	1	1	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0015	1954	2	0	2	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0016	1956	2	2	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0017	1956	2	0	1	0	1	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0018	1956	2	2	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0019	1956	2	2	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0020	1956	1	0	0	0	0	1	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0021	1956	1	0	0	0	1	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0022	1954	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0023	1956	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0024	1954	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0025	1955	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919