Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APLF_chr2_68462585_68585162	0/0	t0015	2288	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0016	2281	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	t0017	2281	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLNR_chr11_57228591_57242250	0/0	t0001	2514	116	7	18	71	2	18	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0002	2518	89	16	10	49	4	10	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0003	2518	63	17	16	18	3	9	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0004	2518	48	6	4	31	3	4	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0005	2518	26	0	13	11	1	1	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0006	2518	25	24	1	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/1	t0007	2518	12	0	8	1	1	1	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0008	2517	8	7	1	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0009	2514	6	1	2	1	0	2	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0010	2518	5	5	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0011	2518	4	0	0	4	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0012	2518	4	4	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0013	2518	3	3	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0014	2514	3	0	3	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0015	2514	3	2	1	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0016	2518	2	0	0	2	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	1/0	t0017	2518	2	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0018	2518	1	0	1	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0019	2514	1	0	0	0	1	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0020	2517	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0021	2518	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0022	2514	1	0	0	0	0	1	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0023	2514	1	0	0	1	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0024	2514	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0025	2514	1	0	0	1	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0026	2518	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0027	2514	1	0	0	0	1	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	t0028	2518	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLN_chrX_129640259_129659956	1/1	t0001	2991	89	8	31	26	5	17	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0002	2994	77	18	4	49	0	6	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0003	2994	60	29	6	22	0	3	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0004	2991	24	3	0	21	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0005	2991	20	5	0	14	0	1	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0006	2991	12	0	4	0	6	2	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0007	2991	7	7	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0008	2995	5	0	1	4	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0009	2991	2	0	0	2	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0010	2994	2	1	1	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0011	2992	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0012	2994	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0013	2993	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0014	2991	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0015	2988	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0016	2991	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0017	2991	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0018	2986	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0019	2991	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956