JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LITAF_chr16_11542722_11591919	0/0	t0026	1954	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0027	1955	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0028	1955	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0029	1955	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0030	1956	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0031	1956	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0032	1955	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0033	1956	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0034	1955	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0035	1956	1	0	0	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0036	1956	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	t0037	1955	1	0	0	0	0	1	copy fasta	LITAF	chr16	11542722	11591919
LIX1L_chr1_145928423_145963017	0/1	t0001	2979	165	22	38	84	5	15	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0002	2983	70	35	18	13	0	4	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0003	2986	15	14	1	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0004	2980	13	3	1	6	0	3	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0005	2983	8	0	0	8	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	1/0	t0006	2978	5	1	1	2	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0007	2986	4	0	0	3	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0008	2981	4	0	2	0	0	2	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0009	2986	3	2	1	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0010	2979	3	0	0	1	0	2	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0011	2985	2	2	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0012	2983	2	2	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0013	2979	2	2	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0014	2984	2	0	1	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0015	2986	2	2	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0016	2979	1	0	0	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0017	2979	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0018	2984	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0019	2978	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0020	2979	1	0	0	0	1	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0021	2979	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0022	2979	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0023	2976	1	0	0	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0024	2979	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0025	2978	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0026	2978	1	0	0	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0027	2979	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0028	2984	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0029	2979	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0030	2979	1	0	0	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	t0031	2979	1	0	1	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1_chr5_97086867_97147611	1/0	t0001	2917	160	35	34	66	7	17	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0002	2919	106	30	16	46	2	12	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0003	2919	21	0	1	17	0	3	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/1	t0004	2918	15	1	2	5	5	1	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0005	2916	8	1	4	3	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0006	2918	6	5	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0007	2918	5	1	3	1	0	0	copy fasta	LIX1	chr5	97086867	97147611