JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LLGL2_chr17_75520697_75580209	1/0	t0002	491	105	6	22	62	6	8	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0003	491	101	56	19	15	3	8	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0004	491	27	9	4	12	0	2	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/1	t0005	501	27	7	9	4	3	3	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0006	491	4	4	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0007	501	4	0	0	4	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0008	501	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	t0009	501	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLPH_chr12_66111555_66135750	0/0	t0001	7340	71	6	10	42	3	10	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0002	7348	64	2	3	55	0	4	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	1/1	t0003	7339	52	2	16	15	4	13	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0004	7343	27	1	12	0	6	8	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0005	7339	18	4	4	8	0	2	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0006	7346	13	13	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0007	7339	11	10	1	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0008	7342	6	4	2	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0009	7347	4	0	0	4	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0010	7339	4	1	0	0	2	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0011	7341	4	3	1	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0012	7341	4	1	0	2	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0013	7340	4	4	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0014	7343	3	0	0	3	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0015	7339	3	3	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0016	7338	2	1	1	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0017	7348	2	0	0	2	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0018	7326	2	2	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0019	7340	2	0	1	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0020	7341	2	2	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0021	7342	2	2	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0022	7340	2	0	0	2	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0023	7338	2	0	0	2	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0024	7338	2	0	1	0	1	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0025	7345	2	2	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0026	7342	2	0	2	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0027	7338	2	2	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0028	7348	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0029	7341	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0030	7347	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0031	7348	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0032	7347	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0033	7346	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0034	7348	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0035	7348	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0036	7349	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0037	7348	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0038	7349	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0039	7347	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0040	7349	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0041	7338	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0042	7339	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750