JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LLPH_chr12_66111555_66135750	0/0	t0043	7338	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0044	7339	1	0	1	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0045	7339	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0046	7340	1	0	1	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0047	7339	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0048	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0049	7343	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0050	7343	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0051	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0052	7338	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0053	7340	1	0	0	0	1	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0054	7338	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0055	7339	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0056	7340	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0057	7341	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0058	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0059	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0060	7340	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0061	7340	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0062	7340	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0063	7341	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0064	7342	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0065	7345	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0066	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0067	7341	1	0	0	0	0	1	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0068	7347	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0069	7340	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0070	7343	1	0	0	0	1	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0071	7340	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0072	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0073	7342	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0074	7343	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0075	7343	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0076	7338	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0077	7339	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0078	7341	1	1	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	t0079	7340	1	0	0	1	0	0	copy fasta	LLPH	chr12	66111555	66135750
LMAN1L_chr15_74807835_74830754	1/1	t0001	170	406	94	63	190	18	39	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	t0002	170	1	0	1	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	t0003	170	1	0	0	0	0	1	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1_chr18_59322823_59364265	1/1	t0001	3292	175	34	40	76	8	15	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0002	3292	139	17	24	81	3	14	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0003	3292	18	0	0	17	0	1	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0004	3292	10	2	3	0	3	2	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0005	3292	9	9	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0006	3292	8	0	5	3	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0007	3292	5	5	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0008	3292	4	0	1	3	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0009	3273	3	3	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0010	3292	3	2	1	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265