JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMAN1_chr18_59322823_59364265	0/0	t0011	3292	2	2	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0012	3292	2	2	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0013	3292	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0014	3292	1	1	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0015	3292	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0016	3292	1	0	1	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0017	3292	1	1	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0018	3292	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0019	3292	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	t0020	3292	1	0	1	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN2L_chr2_96700929_96745064	1/1	t0001	1352	253	72	52	96	13	18	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	t0002	1352	12	10	2	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	t0003	1352	1	0	0	0	1	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	t0004	1352	1	1	0	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	t0005	1352	1	1	0	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2_chr5_177326567_177356668	1/1	t0001	541	312	49	63	144	14	40	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0002	541	32	28	2	0	2	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0003	541	23	23	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0004	541	2	0	2	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0005	541	2	0	0	2	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0006	541	1	0	1	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0007	541	1	0	0	1	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0008	541	1	0	0	1	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0009	541	1	0	1	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	t0010	541	1	0	1	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMBR1L_chr12_49092139_49115847	1/1	t0001	826	363	87	50	176	12	36	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0002	826	4	4	0	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0003	826	3	1	2	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0004	826	2	0	0	0	0	2	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0005	826	2	2	0	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0006	826	1	1	0	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0007	826	1	0	1	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0008	826	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0009	826	1	0	1	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0010	826	1	1	0	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	t0011	826	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1_chr7_156672791_156898183	0/0	t0001	6489	15	0	9	5	1	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0002	6485	13	0	0	9	0	4	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0003	6485	11	0	0	9	0	2	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0004	6487	8	0	0	8	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0005	6485	7	0	3	3	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0006	6478	7	0	1	3	0	3	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0007	6482	6	0	0	6	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0008	6483	6	3	0	2	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0009	6487	6	0	4	0	0	2	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0010	6485	6	0	3	1	1	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0011	6485	5	0	0	5	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0012	6485	5	0	0	5	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0013	6497	4	0	2	0	2	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0014	6489	4	0	0	4	0	0	copy fasta	LMBR1	chr7	156672791	156898183