JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMBR1_chr7_156672791_156898183	0/0	t0115	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0116	6485	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0117	6483	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0118	6480	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0119	6480	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0120	6481	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0121	6478	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0122	6478	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0123	6478	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0124	6478	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0125	6478	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0126	6489	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0127	6486	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0128	6489	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0129	6483	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0130	6485	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0131	6478	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0132	6488	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0133	6489	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0134	6490	1	0	0	0	1	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0135	6490	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0136	6487	1	0	0	0	1	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0137	6487	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0138	6484	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0139	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0140	6488	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0141	6481	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0142	6481	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0143	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0144	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0145	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0146	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0147	6478	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0148	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0149	6496	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0150	6487	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0151	6488	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0152	6479	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0153	6481	1	1	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0154	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0155	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0156	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0157	6482	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0158	6483	1	0	1	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0159	6481	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0160	6485	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0161	6485	1	0	0	0	1	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0162	6486	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0163	6475	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0164	6489	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183