JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMBR1_chr7_156672791_156898183	0/0	t0165	6475	1	0	0	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	t0166	6487	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBRD1_chr6_69669010_69802010	1/1	t0001	2278	112	29	23	41	6	11	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0002	2278	111	11	24	58	4	14	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0003	2278	36	2	13	16	0	5	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0004	2277	34	26	4	4	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0005	2277	22	0	0	21	0	1	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0006	2278	7	6	1	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0007	2278	6	0	3	0	3	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0008	2278	4	4	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0009	2278	3	0	0	3	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0010	2277	2	2	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0011	2278	2	0	0	0	1	1	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0012	2278	1	0	0	0	0	1	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0013	2278	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0014	2278	1	0	0	1	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0015	2278	1	0	0	0	0	1	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0016	2278	1	0	1	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0017	2278	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0018	2278	1	0	1	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0019	2277	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	t0020	2278	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD2_chr5_36093407_36156887	1/0	t0001	6029	86	14	8	48	1	14	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0002	6029	67	14	15	22	6	10	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0003	6029	51	1	12	29	6	3	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0004	6029	29	0	4	25	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0005	6029	27	2	5	17	0	3	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0006	6029	12	11	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0007	6025	11	9	2	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0008	6029	9	8	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0009	6029	8	0	0	8	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0010	6029	6	5	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0011	6029	4	0	2	1	1	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0012	6029	4	4	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0013	6029	4	0	0	4	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0014	6029	3	3	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0015	6029	3	0	3	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0016	6029	3	1	2	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0017	6029	3	0	0	3	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0018	6038	3	3	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0019	6029	2	0	0	2	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0020	6029	2	2	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0021	6029	2	0	0	0	0	2	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/1	t0022	6029	2	0	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0023	6029	2	0	1	0	0	1	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0024	6029	2	0	2	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0025	6029	2	0	0	2	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0026	6029	2	2	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0027	6029	1	0	0	1	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0028	6029	1	0	0	1	0	0	copy fasta	LMBRD2	chr5	36093407	36156887