Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APLN_chrX_129640259_129659956	0/0	t0020	2994	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0021	2994	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0022	2994	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0023	2994	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0024	2994	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0025	2991	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0026	2994	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0027	2991	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0028	2991	1	0	0	0	0	1	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	t0029	2978	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLP1_chr19_35863574_35884792	1/1	t0001	415	202	59	32	71	6	32	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	t0002	415	37	22	0	15	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	t0003	411	11	5	3	0	2	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	t0004	415	4	4	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	t0005	415	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	t0006	415	1	0	1	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP2_chr11_130064894_130149805	1/0	t0001	1442	170	44	31	83	4	7	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/1	t0002	1442	61	20	6	29	2	3	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0003	1442	12	1	0	11	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0004	1442	5	3	2	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0005	1442	5	5	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0006	1442	5	4	1	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0007	1442	4	0	2	0	2	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0008	1442	3	3	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0009	1442	2	2	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0010	1442	1	1	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0011	1442	1	1	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0012	1442	1	1	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0013	1442	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0014	1442	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0015	1442	1	1	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	t0016	1442	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APMAP_chr20_24957925_24997751	1/0	t0001	952	207	60	44	59	8	35	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/1	t0002	952	37	4	8	20	1	3	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0003	952	25	10	11	0	3	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0004	952	8	8	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0005	952	4	3	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0006	952	2	2	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0007	952	1	0	0	0	0	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0008	952	1	0	0	1	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0009	952	1	0	0	1	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0010	952	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0011	952	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0012	952	1	0	0	1	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	t0013	952	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APOA1_chr11_116830751_116842622	1/1	t0001	96	448	92	80	208	18	48	copy fasta	APOA1	chr11	116830751	116842622
APOA2_chr1_161217292_161228628	1/1	t0001	172	430	90	74	200	16	48	copy fasta	APOA2	chr1	161217292	161228628
APOA4_chr11_116815700_116828304	1/0	t0001	281	329	81	45	157	12	33	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/1	t0002	277	123	6	34	59	6	17	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	t0003	281	9	8	1	0	0	0	copy fasta	APOA4	chr11	116815700	116828304