JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMBRD2_chr5_36093407_36156887	0/0	t0029	6029	1	0	0	0	0	1	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0030	6029	1	0	0	1	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0031	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0032	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0033	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0034	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0035	6029	1	0	0	0	0	1	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0036	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0037	6029	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0038	6029	1	0	0	0	0	1	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	t0039	6025	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMCD1_chr3_8496823_8579668	0/0	t0001	7189	83	25	25	22	5	6	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	1/0	t0002	7187	71	17	14	26	2	11	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/1	t0003	7188	71	3	19	32	6	10	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0004	7187	13	7	0	0	0	6	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0005	7187	4	4	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0006	7189	4	0	0	4	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0007	7190	3	3	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0008	7187	3	3	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0009	7188	3	1	1	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0010	7186	3	0	0	3	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0011	7188	3	0	0	3	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0012	7172	2	2	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0013	7189	2	1	1	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0014	7187	2	2	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0015	7187	2	2	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0016	7186	2	0	0	2	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0017	7190	2	0	0	2	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0018	7188	2	0	0	2	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0019	7188	2	0	0	0	0	2	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0020	7187	1	0	0	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0021	7189	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0022	7190	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0023	7187	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0024	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0025	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0026	7188	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0027	7187	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0028	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0029	7189	1	0	1	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0030	7187	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0031	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0032	7188	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0033	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0034	7190	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0035	7189	1	0	0	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0036	7189	1	0	1	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0037	7190	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0038	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0039	7190	1	0	0	0	1	0	copy fasta	LMCD1	chr3	8496823	8579668