JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMCD1_chr3_8496823_8579668	0/0	t0040	7189	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0041	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0042	7189	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0043	7189	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0044	7186	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0045	7188	1	0	0	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0046	7188	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0047	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0048	7188	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0049	7188	1	0	1	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0050	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0051	7187	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0052	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0053	7187	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0054	7188	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0055	7188	1	0	1	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	t0056	7188	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMF1_chr16_848634_975984	1/1	t0001	903	248	48	49	99	13	37	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0002	903	14	9	3	0	0	2	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0003	903	7	1	1	1	1	3	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0004	903	5	3	2	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0005	903	3	0	2	0	1	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0006	903	3	3	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0007	903	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0008	903	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0009	903	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0010	903	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0011	903	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0012	903	1	0	0	0	1	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0013	903	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0014	903	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0015	903	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0016	903	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0017	903	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0018	903	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	t0019	903	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF2_chr22_50497949_50512702	1/1	t0001	470	393	86	83	164	17	41	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0002	470	5	0	2	0	1	2	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0003	470	4	0	0	4	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0004	470	4	4	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0005	470	3	3	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0006	470	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0007	470	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0008	470	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0009	470	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	t0010	470	1	0	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMLN_chr3_197955217_198048720	1/1	t0001	5083	94	6	24	43	4	15	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0002	5071	18	6	7	0	2	3	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0003	5026	15	0	0	11	0	4	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0004	5022	9	0	0	9	0	0	copy fasta	LMLN	chr3	197955217	198048720