JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMLN_chr3_197955217_198048720	0/0	t0005	5025	9	8	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0006	5117	8	7	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0007	5071	7	7	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0008	5091	7	0	2	3	1	1	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0009	5050	7	7	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0010	5067	5	1	0	1	1	2	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0011	5092	5	0	0	5	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0012	5071	5	0	0	0	0	5	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0013	5083	4	1	2	0	0	1	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0014	5210	4	4	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0015	5087	3	0	0	2	0	1	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0016	5071	3	3	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0017	4915	3	3	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0018	5025	3	3	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0019	5071	2	0	1	0	0	1	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0020	5010	2	2	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0021	5037	2	0	0	2	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0022	5071	2	0	0	0	0	2	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0023	5071	2	2	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0024	4979	2	1	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0025	5025	2	2	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0026	5050	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0027	5163	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0028	5009	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0029	5009	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0030	5067	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0031	5071	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0032	5159	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0033	5083	1	0	0	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0034	5400	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0035	5400	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0036	5083	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0037	5083	1	0	0	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0038	5083	1	0	0	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0039	5037	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0040	5083	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0041	5083	1	0	0	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0042	5083	1	0	0	0	0	1	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0043	4912	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0044	4915	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0045	4915	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0046	5182	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0047	4845	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0048	5025	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0049	5073	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0050	5756	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0051	5071	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0052	5025	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0053	5072	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0054	5117	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720