JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMLN_chr3_197955217_198048720	0/0	t0055	4979	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0056	5071	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0057	5209	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0058	5026	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0059	5025	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	t0060	5024	1	0	1	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMNA_chr1_156109711_156142866	1/1	t0001	311	279	79	64	98	6	30	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	t0002	311	7	7	0	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156145081	1/0	t0001	1184	184	22	51	84	3	23	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0002	1185	34	27	5	0	0	2	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0003	1184	21	13	0	5	0	3	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0004	1183	16	3	1	9	0	3	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0005	1184	6	6	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0006	1184	6	6	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0007	1184	3	3	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0008	1186	3	0	2	0	1	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/1	t0009	1185	2	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0010	1184	2	2	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0011	1184	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0012	1185	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0013	1185	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0014	1185	1	0	0	0	0	1	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0015	1184	1	0	0	0	0	1	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0016	1185	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0017	1184	1	0	0	0	0	1	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0018	1184	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	t0019	1184	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNB1_chr5_126772136_126842020	0/1	t0001	1130	187	27	33	97	7	22	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	1/0	t0002	1130	101	22	21	42	3	12	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0003	1130	59	27	11	19	0	2	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0004	1130	14	1	1	7	1	4	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0005	1130	7	3	3	0	1	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0006	1130	2	2	0	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0007	1130	2	2	0	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0008	1130	1	0	0	1	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	t0009	1130	1	0	1	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB2_chr19_2423166_2461959	1/0	t0001	2772	130	24	41	40	9	15	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0002	2773	88	24	4	54	0	6	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0003	2772	49	16	15	7	2	9	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/1	t0004	2772	42	0	1	28	1	11	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0005	2772	6	6	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0006	2772	5	2	1	0	2	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0007	2772	4	4	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0008	2774	4	1	0	3	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0009	2772	3	3	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0010	2772	2	0	0	0	0	2	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0011	2772	2	0	0	2	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0012	2773	2	0	0	2	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0013	2772	2	2	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0014	2772	2	0	0	2	0	0	copy fasta	LMNB2	chr19	2423166	2461959