JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMNB2_chr19_2423166_2461959	0/0	t0015	2760	1	0	0	0	0	1	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0016	2772	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0017	2772	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0018	2772	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0019	2772	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0020	2772	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0021	2773	1	0	0	0	0	1	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0022	2772	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0023	2773	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0024	2772	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0025	2772	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0026	2772	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0027	2772	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0028	2773	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	t0029	2772	1	0	0	0	0	1	copy fasta	LMNB2	chr19	2423166	2461959
LMNTD1_chr12_25471082_25558283	0/1	t0001	647	234	33	49	121	5	25	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	1/0	t0002	647	147	46	26	48	7	19	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	t0003	647	4	4	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	t0004	647	2	1	0	1	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	t0005	647	1	0	1	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD2_chr11_549850_565738	0/1	t0001	153	344	86	70	134	15	38	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	t0002	153	39	10	11	14	1	3	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	t0003	153	3	2	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	t0004	153	1	0	0	0	0	1	copy fasta	LMNTD2	chr11	549850	565738
LMO1_chr11_8219309_8268878	0/1	t0001	824	273	39	50	135	11	37	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0002	824	96	10	24	50	1	11	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0003	824	35	32	3	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	1/0	t0004	824	7	6	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0005	824	4	4	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0006	824	3	3	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0007	824	1	1	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0008	824	1	0	1	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0009	824	1	1	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0010	824	1	1	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0011	824	1	1	0	0	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	t0012	824	1	0	0	1	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO2_chr11_33853576_33897076	0/0	t0001	1399	117	11	16	68	4	18	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/1	t0002	1399	101	21	26	37	6	10	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0003	1399	36	18	6	8	2	2	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0004	1398	30	2	5	20	1	2	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0005	1398	29	18	1	9	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0006	1399	29	2	4	20	0	3	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0007	1398	28	6	0	17	1	4	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0008	1398	21	8	5	4	0	4	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0009	1398	10	0	0	10	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0010	1400	9	0	7	2	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0011	1396	3	3	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0012	1400	3	0	2	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0013	1398	3	0	0	2	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0014	1399	3	0	3	0	0	0	copy fasta	LMO2	chr11	33853576	33897076